1887
Research Open Access
Like 0

Abstract

BACKGROUND

The Canadian Sentinel Practitioner Surveillance Network routinely undertakes multiplex respiratory virus testing, vaccine effectiveness (VE) estimation by test-negative design (TND), and whole genome sequencing (WGS) of vaccine-targeted viruses.

AIM

To estimate 2025/26 LP.8.1 VE against community-based COVID-19, including variant-specific, and explore the impact of other respiratory viruses among COVID-19 cases and/or controls.

METHODS

Participants were ≥ 12-year-old outpatients presenting with acute respiratory illness between 26 October 2025 and 07 March 2026. COVID-19 vaccination information was registry-based. Primary TND analyses excluded influenza virus-infected controls. Sensitivity analyses explored inclusion and/or exclusion of influenza and other respiratory viral infections among COVID-19 cases and/or controls. WGS supported VE interpretation and variant-specific estimation.

RESULTS

We included 3,802 participants (2,832 (74%) aged 12–64 years; 970 (26%) aged ≥ 65 years), with 310 COVID-19 cases (29 vaccinated; 9%) and 3,492 controls (577 vaccinated; 17%). At median 9 weeks post-vaccination, LP.8.1 VE was 48% (95%CI: 21 to 66): 44% (95%CI: −12 to 72) for 12–64 and 53% (95%CI: 21 to 73) for ≥ 65-year-olds. In sensitivity analyses, VE was stable for ≥ 65-year-olds. Among 12–64-year-olds, VE decreased when including influenza virus infections among controls but increased when excluding co-infections, recognising uncertainty with reduced sample size. Against viruses that failed vs succeeded WGS, VE was 26% (95%CI: −63 to 66) vs 53% (95%CI: 24 to 71), 63% (95%CI: 30 to 80) against the XFG variant. Most SARS-CoV-2 co-infections with semi-quantification, including those failing WGS, showed higher viral load for the non-SARS-CoV-2 infection.

CONCLUSION

The 2025/26 LP.8.1 vaccine approximately halved the medically attended COVID-19 risk. Multiplex testing to identify primary co-infections among cases, or correlated vaccine-preventable infections among controls, may address VE under-estimation.

Loading

Article metrics loading...

/content/10.2807/1560-7917.ES.2026.31.18.2600331
2026-05-07
2026-06-10
/content/10.2807/1560-7917.ES.2026.31.18.2600331
Loading
Loading full text...

Full text loading...

/deliver/fulltext/eurosurveillance/31/18/eurosurv-31-18-3.html?itemId=/content/10.2807/1560-7917.ES.2026.31.18.2600331&mimeType=html&fmt=ahah

References

  1. Public Health Agency of Canada (PHAC), Government of Canada. Canadian respiratory virus surveillance report. Ottawa: PHAC. [Accessed 26 Mar 2026]. Available from: https://health-infobase.canada.ca/respiratory-virus-surveillance/covid-19.html
  2. European Centre for Disease Prevention and Control (ECDC). The European Respiratory Virus Surveillance Summary (ERVISS). Stockholm: ECDC; 2026. [Accessed 26 Mar 2026]. Available from: https://www.ecdc.europa.eu/en/publications-data/european-respiratory-virus-surveillance-summary-erviss
  3. Pan American Health Organization (PAHO)_ WHOAR. SARS CoV2 Situation - Region of the Americas - PAHO/WHO | Pan American Health Organization. Washington DC: PAHO [Accessed 26 Mar 2026]. Available from: https://www.paho.org/en/covid-19-weekly-updates-region-americas
  4. United States Centers for Disease Control and Prevention (US CDC). Respiratory virus activity levels. US CDC: Atlanta. [Accessed 26 Mar 2026]. Available from: https://www.cdc.gov/respiratory-viruses/data/activity-levels.html
  5. Sabaiduc S, Kaweski SE, Separovic L, Gao R, Ranadheera C, Bastien N, et al. Emergence of seasonal influenza A(H3N2) variants with immune escape potential warrants enhanced molecular and epidemiological surveillance for the 2025-2026 season. J Assoc Med Microbiol Infect Dis Can. 2025;10(4):281-98.  https://doi.org/10.3138/jammi-2025-0025  PMID: 42079493 
  6. European Centre for Disease Prevention and Control (ECDC). Threat Assessment Brief. Assessing the risk of influenza for the EU/EEA in the context of increasing circulation of A(H3N2) subclade K. Stockholm: ECDC; 2025. [Accessed 25 Jan 2026]. Available from: https://www.ecdc.europa.eu/sites/default/files/documents/Threat%20Assessment%20Brief%20-%20Assessing%20the%20risk%20of%20increasing%20circulation%20of%20A%28H3N2%29%20subclade%20K.pdf
  7. Public Health Agency of Canada (PHAC). COVID-19 vaccines: Canadian Immunization Guide. Ottawa: PHAC; 2025. [Accessed 26 Mar 2026]. Available from: https://www.canada.ca/en/public-health/services/publications/healthy-living/canadian-immunization-guide-part-4-active-vaccines/page-26-covid-19-vaccine.html#a3
  8. World Health Organization (WHO). Statement on the antigen composition of COVID-19 vaccines. Geneva: WHO; 2025. [Accessed 26 Mar 2026]. Available from: https://www.who.int/news/item/18-12-2025-statement-on-the-antigen-composition-of-covid-19-vaccines
  9. Skowronski D, Tweed S, Petric M, Mak A, McNabb G, De Serres G. Effectiveness of vaccine against medical consultation due to laboratory-confirmed influenza: results from a sentinel physician pilot project in British Columbia, 2004-2005. Can Commun Dis Rep. 2005;31(18):181-91. PMID: 16669132 
  10. Doll MK, Pettigrew SM, Ma J, Verma A. Effects of Confounding Bias in Coronavirus Disease 2019 (COVID-19) and Influenza Vaccine Effectiveness Test-Negative Designs Due to Correlated Influenza and COVID-19 Vaccination Behaviors. Clin Infect Dis. 2022;75(1):e564-71.  https://doi.org/10.1093/cid/ciac234  PMID: 35325923 
  11. De Serres G, Skowronski DM, Wu XW, Ambrose CS. The test-negative design: validity, accuracy and precision of vaccine efficacy estimates compared to the gold standard of randomised placebo-controlled clinical trials. Euro Surveill. 2013;18(37):20585.  https://doi.org/10.2807/1560-7917.ES2013.18.37.20585  PMID: 24079398 
  12. Skowronski DM, Zhan Y, Kaweski SE, Sabaiduc S, Khalid A, Olsha R, et al. 2023/24 mid-season influenza and Omicron XBB.1.5 vaccine effectiveness estimates from the Canadian Sentinel Practitioner Surveillance Network (SPSN). Euro Surveill. 2024;29(7):2400076.  https://doi.org/10.2807/1560-7917.ES.2024.29.7.2400076  PMID: 38362622 
  13. Separovic L, Sabaiduc S, Zhan Y, Kaweski SE, Olsha R, Hasso M, et al. Interim 2025/26 influenza vaccine effectiveness estimates with immuno-epidemiological considerations for A(H3N2) subclade K protection, Canada, January 2026. Euro Surveill. 2026;31(5):2600068.  https://doi.org/10.2807/1560-7917.ES.2026.31.5.2600068  PMID: 41645799 
  14. Lucaccioni H, Marques DF, Kirsebom F, Emborg HD, Hamilton M, Whitaker H, et al. , European IVE group. Influenza vaccine effectiveness from nine studies during drifted A(H3N2) subclade K predominance, Europe, September 2025 to January 2026. Euro Surveill. 2026;31(7):2600109.  https://doi.org/10.2807/1560-7917.ES.2026.31.7.2600109  PMID: 41716088 
  15. Maloney P, Reeves EL, Wielgosz K, Price AM, Natarajan K, DeSilva MB, et al. , CDC Influenza Vaccine Effectiveness Collaborators, CDC Influenza Vaccine Effectiveness Collaborators. Interim Estimates of 2025-26 Seasonal Influenza Vaccine Effectiveness - United States, September 2025-February 2026. MMWR Morb Mortal Wkly Rep. 2026;75(9):116-23.  https://doi.org/10.15585/mmwr.mm7509a2  PMID: 41818161 
  16. Public Health Agency of Canada (PHAC). Respiratory syncytial virus (RSV) vaccines: Canadian Immunization Guide. Ottawa: PHAC; 2026. [Accessed 26 Apr 2026]. Available from: https://www.canada.ca/en/public-health/services/publications/healthy-living/canadian-immunization-guide-part-4-active-vaccines/respiratory-syncytial-virus.html#a7
  17. O’Toole Á, Scher E, Underwood A, Jackson B, Hill V, McCrone JT, et al. Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool. Virus Evol. 2021;7(2):veab064.  https://doi.org/10.1093/ve/veab064  PMID: 34527285 
  18. Public Health Agency of Canada (PHAC). Seasonal respiratory vaccination coverage survey (SRVCS). Ottawa; 2025. [Accessed 29 Mar 2026]. Available from: https://health-infobase.canada.ca/vaccination/seasonal-respiratory-vaccination-coverage-survey/report.html#a4
  19. Separovic L, Sabaiduc S, Zhan Y, Kaweski SE, Carazo S, Olsha R, et al. Effectiveness of 2024/25 KP.2 Vaccine Against Outpatient COVID-19 in Canada. Influenza Other Respir Viruses. 2026;20(3):e70222.  https://doi.org/10.1111/irv.70222  PMID: 41784466 
  20. Institut national de sante publique du Quebec (INSPQ). Donnees de vaccination contre la COVID-19 au Québec. [COVID-19 vaccination data in Quebec]. Québec City: INSPQ; 2026. French. [Accessed 27 Apr 2026]. Available from: https://www.inspq.qc.ca/en/node/26315
  21. Li P, Faraone JN, Hsu CC, Chamblee M, Liu Y, Zheng YM, et al. Role of glycosylation mutations at the N-terminal domain of SARS-CoV-2 XEC variant in immune evasion, cell-cell fusion, and spike stability. J Virol. 2025;99(4):e0024225.  https://doi.org/10.1128/jvi.00242-25  PMID: 40135879 
  22. Li P, Faraone JN, Hsu CC, Chamblee M, Liu Y, Zheng YM, et al. Neutralization and Stability of JN.1-derived LB.1, KP.2.3, KP.3 and KP.3.1.1 Subvariants. bioRxiv. 2024Sep5;2024.09.04.611219.
  23. Happle C, Hoffmann M, Stankov MV, Nehlmeier I, Eichmann A, Witte T, et al. Effects of LP.8.1-adapted mRNA vaccination on SARS-CoV-2 variant neutralisation. Lancet Infect Dis. 2026;26(1):e3-5.  https://doi.org/10.1016/S1473-3099(25)00690-5  PMID: 41285142 
  24. Mellis IA, Wu M, Hong H, Bowen A, Daniel K, Gherasim C, et al. LP.8.1-directed COVID-19 mRNA vaccines durably boost neutralizing antibodies and mitigate ancestral immune imprinting. Microbiology; 2026 Jan. [Accessed 7 Apr 2026]. Available from: http://biorxiv.org/lookup/doi/10.64898/2026.01.03.697434 https://doi.org/10.64898/2026.01.03.697434 
  25. Cao G, Xu C, Wang L, Chai K, Wu B. Global Surveillance and Biological Characterization of the SARS-CoV-2 NB.1.8.1 Variant: An Emerging VUM Lineage Under Scrutiny. Viruses. 2025;17(11):1457.  https://doi.org/10.3390/v17111457  PMID: 41305479 
  26. Shakya M, Ma KC, Hughes LJ, Smith C, Atherton LJ, Boehm AB, et al. Early Detection and Surveillance of the SARS-CoV-2 Variant BA.3.2 - Worldwide, November 2024-February 2026. MMWR Morb Mortal Wkly Rep. 2026;75(10):130-7.  https://doi.org/10.15585/mmwr.mm7510a1  PMID: 41855090 
  27. Zhang L, Chen N, Eichmann A, Nehlmeier I, Moldenhauer AS, Stankov MV, et al. Epidemiological and virological update on the emerging SARS-CoV-2 variant BA.3.2. Lancet Infect Dis. 2026;26(1):e1-2.  https://doi.org/10.1016/S1473-3099(25)00658-9  PMID: 41240961 
  28. Global Virus Network (GVN). Global Virus Network monitors SARS-COV-2 variant BA.3.2 (‘Cicada’), emphasizes no cause for alarum. Tampa: GVN; 2026. [Accessed 7 Apr 2026]. Available from: https://www.eurekalert.org/news-releases/1122726
  29. Public Health Ontario (PHO). SARS-CoV-2 genomic surveillance in Ontario: March 30, 2026. Toronto: PHO; 2026 [Accessed 11 Apr 2026]. Available from: https://www.publichealthontario.ca/-/media/documents/ncov/epi/covid-19-sars-cov2-whole-genome-sequencing-epi-summary.pdf
  30. Jule Z, Römer C, Hossen T, Sviridchik V, Reedoy K, Ganga Y, et al. Evolution and viral properties of the SARS-CoV-2 BA.3.2 subvariant. Virus Evol. 2026;12(1):veag011.  https://doi.org/10.1093/ve/veag011  PMID: 41884606 
  31. Lanièce Delaunay C, Mateo Urdiales A, Pérez-Gimeno G, O’Reilly K, Uras M, Erdwiens A, et al. COVID-19 Vaccine Effectiveness Among Older Adults in 2025/26. SSRN; 2026.  https://doi.org/10.2139/ssrn.6379099 
  32. Appaneal HJ, Lopes VV, Nguyen JL, Volkman HR, Zasowski EJ, Caffrey AR. Early effectiveness of the BNT162b2 LP.8.1 vaccine against COVID-19 emergency department, urgent care, and outpatient visits in the US Veterans Affairs Healthcare System. medRxiv. 2026Jan23;2026.01.22.26344618 . https://doi.org/10.64898/2026.01.22.26344618 
  33. National Advisory Committee on Immunization (NACI). Statement on seasonal influenza vaccines for 2025-26. Ottawa: Public Health Agency of Canada; 2025. [Accessed 28 Mar 2026]. Available from: https://www.canada.ca/en/public-health/services/publications/vaccines-immunization/national-advisory-committee-immunization-statement-seasonal-influenza-vaccines-2025-2026.html
/content/10.2807/1560-7917.ES.2026.31.18.2600331
Loading

Data & Media loading...

Supplementary data

Submit comment
Close
Comment moderation successfully completed
This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error